搜索医学 AI 论文与资源

ICLR 2026 Poster accepted paper at ICLR 2026. Current methods for detecting spurious correlations rely on data splits or error patterns, leaving many harmful shortcuts invisible when counterexamples are absent. We introduce BEE (Bridging Explainability and Embeddings), a framework that shifts the focus from model predictions to the weight space and embedding geometry underlying decisions. By analyzing how fine-tuning perturbs pretrained representations, BEE uncovers spurious correlations that remain hidden from conventional evaluation pipelines. We use linear probing as a transparent diagnostic lens, revealing spurious features that not only persist after full fine-tuning but also transfer across diverse state-of-the-art models. Code/project link: https://github.com/bit-ml/bee

ICLR 2026 Poster accepted paper at ICLR 2026. Most existing learning-based methods for solving imaging inverse problems can be roughly divided into two classes: iterative algorithms, such as plug-and-play and diffusion methods leveraging pretrained denoisers, and unrolled architectures that are trained end-to-end for specific imaging problems. Iterative methods in the first class are computationally costly and often yield suboptimal reconstruction performance, whereas unrolled architectures are generally problem-specific and require expensive training. In this work, we propose a novel non-iterative, lightweight architecture that incorporates knowledge about the forward operator (acquisition physics and noise parameters) without relying on unrolling. Our model is trained to solve a wide range of inverse problems, such as deblurring, magnetic resonance imaging, computed tomography, inpainting, and super-resolution, and handles arbitrary image sizes and channels, such as grayscale, complex, and color data. Code/project link: https://github.com/matthieutrs/ram

ICLR 2026 Poster accepted paper at ICLR 2026. The rapid progress of visual autoregressive (VAR) models has brought new opportunities for text-to-image generation, but also heightened safety concerns. Existing concept erasure techniques, primarily designed for diffusion models, fail to generalize to VARs due to their next-scale token prediction paradigm. In this paper, we first propose a novel VAR Erasure framework **VARE** that enables stable concept erasure in VAR models by leveraging auxiliary visual tokens to reduce fine-tuning intensity. Building upon this, we introduce **S-VARE**, a novel and effective concept erasure method designed for VAR, which incorporates a filtered cross entropy loss to precisely identify and minimally adjust unsafe visual tokens, along with a preservation loss to maintain semantic fidelity, addressing the issues such as language drift and reduced diversity introduce by na\"ive fine-tuning.

ICLR 2026 Poster accepted paper at ICLR 2026. The development of foundation models for functional magnetic resonance imaging (fMRI) time series holds significant promise for predicting phenotypes related to disease and cognition. Current models, however, are often trained using a mask-and-reconstruct objective on small brain regions. This focus on low-level information leads to representations that are sensitive to noise and temporal fluctuations, necessitating extensive fine-tuning for downstream tasks. We introduce Brain-Semantoks, a self-supervised framework designed specifically to learn abstract representations of brain dynamics. Its architecture is built on two core innovations: a semantic tokenizer that aggregates noisy regional signals into robust tokens representing functional networks, and a self-distillation objective that enforces representational stability across time.

ICLR 2026 Poster accepted paper at ICLR 2026. Brain tumor segmentation in multi-modal MRIs poses significant challenges when one or more modalities are missing. Recent approaches commonly employ parallel fusion strategies; however, these methods often risk losing crucial shared information across modalities, which can degrade segmentation performance. In this paper, we advocate leveraging sequential information bottleneck fusion to effectively preserve shared information across modalities. From an information-theoretic perspective, sequential fusion not only produces more robust fused representations in missing-data scenarios but also achieves a tighter generalization upper bound compared to parallel fusion approaches.

ICLR 2026 Poster accepted paper at ICLR 2026. As large language models (LLMs) continue to revolutionize AI research, there is a growing interest in building large-scale brain foundation models to advance neuroscience. While most existing brain foundation models are pre-trained on time-series signals or connectome features, we propose a novel graph-based pre-training paradigm for constructing a brain graph foundation model. In this paper, we introduce the Brain Graph Foundation Model, termed BrainGFM, a unified framework that leverages graph contrastive learning and graph masked autoencoders for large-scale fMRI-based pre-training. BrainGFM is pre-trained on a diverse mixture of brain atlases with varying parcellations, significantly expanding the pre-training corpus and enhancing the model’s ability to generalize across heterogeneous fMRI-derived brain representations. Code/project link: https://github.com/weixinxu666/BrainGFM

ICLR 2026 Poster accepted paper at ICLR 2026. Adapters have become a widely adopted strategy for efficient fine-tuning of foundation models, particularly in resource-constrained settings. However, their performance under extreme data scarcity—common in medical imaging due to high annotation costs, privacy regulations, and fragmented datasets—remains underexplored. In this work, we present the first comprehensive study of adapter-based fine-tuning for vision foundation models in low-data medical imaging scenarios. We find that, contrary to their promise, conventional Adapters can degrade performance under severe data constraints, performing even worse than simple linear probing when trained on less than 1\% of the corresponding training data.

ICLR 2026 Poster accepted paper at ICLR 2026. Arabic remains one of the most underrepresented languages in natural language processing research, particularly in medical applications, due to the limited availability of open-source data and benchmarks. The lack of resources hinders efforts to evaluate and advance the multilingual capabilities of Large Language Models (LLMs). In this paper, we introduce MedAraBench, a large-scale dataset consisting of Arabic multiple-choice question-answer pairs across various medical specialties. We constructed the dataset by manually digitizing a large repository of academic materials created by medical professionals in the Arabic-speaking region.

ICLR 2026 Poster accepted paper at ICLR 2026. Systematic reviews (SR), in which experts summarize and analyze evidence across individual studies to provide insights on a specialized topic, are a cornerstone for evidence-based clinical decision-making, research, and policy. Given the exponential growth of scientific articles, there is growing interest in using large language models (LLMs) to automate SR generation. However, the ability of LLMs to critically assess evidence and reason across multiple documents to provide recommendations at the same proficiency as domain experts remains poorly characterized. We therefore ask: **Can LLMs match the conclusions of systematic reviews written by clinical experts when given access to the same studies?** To explore this question, we present MedEvidence, a benchmark pairing findings from 100 medical SRs with the studies they are based on.

ICLR 2026 Poster accepted paper at ICLR 2026. Popular explanation methods often produce unreliable feature importance scores due to missingness bias, a systematic distortion that arises when models are probed with ablated, out-of-distribution inputs. Existing solutions treat this as a deep representational flaw that requires expensive retraining or architectural modifications. In this work, we challenge this assumption and show that missingness bias can be effectively treated as a superficial artifact of the model's output space. We introduce MCal, a lightweight post-hoc method that corrects this bias by fine-tuning a simple linear head on the outputs of a frozen base model.

ICLR 2026 Poster accepted paper at ICLR 2026. Medical time series (MedTS) classification suffers from poor generalizability in real-world deployment due to inter- and intra-dataset heterogeneity, such as varying numbers of channels, signal lengths, task definitions, and patient characteristics. % implicit patient characteristics, variable channel configurations, time series lengths, and diagnostic tasks. To address this, we propose FORMED, a novel framework for repurposing a backbone foundation model, pre-trained on generic time series, to enable highly generalizable MedTS classification on unseen datasets. FORMED combines the backbone with a novel classifier comprising two components: (1) task-specific channel embeddings and label queries, dynamically sized to match any number of channels and target classes, and (2) a shared decoding attention layer, jointly trained across datasets to capture medical domain knowledge through task-agnostic feature-query interactions.

ICLR 2026 Poster accepted paper at ICLR 2026. The application of large language models (LLMs) in the medical field has garnered significant attention, yet their reasoning capabilities in more specialized domains like anesthesiology remain underexplored. To bridge this gap, we introduce AnesSuite, the first comprehensive dataset suite specifically designed for anesthesiology reasoning in LLMs. The suite features AnesBench, an evaluation benchmark tailored to assess anesthesiology-related reasoning across three levels: factual retrieval (System 1), hybrid reasoning (System 1.x), and complex decision-making (System 2). Alongside this benchmark, the suite includes three training datasets that provide an infrastructure for continued pre-training (CPT), supervised fine-tuning (SFT), and reinforcement learning with verifiable rewards (RLVR). Code/project link: https://github.com/MiliLab/AnesSuite

ICLR 2026 Poster accepted paper at ICLR 2026. The goal of personalized medicine is to discover a treatment regimen that optimizes a patient's clinical outcome based on their personal genetic and environmental factors. However, candidate treatments cannot be arbitrarily administered to the patient to assess their efficacy; we often instead have access to an *in silico* surrogate model that approximates the true fitness of a proposed treatment. Unfortunately, such surrogate models have been shown to fail to generalize to previously unseen patient-treatment combinations. We hypothesize that domain-specific prior knowledge—such as medical textbooks and biomedical knowledge graphs—can provide a meaningful alternative signal of the fitness of proposed treatments.

ICLR 2026 Poster accepted paper at ICLR 2026. The 12-lead electrocardiogram (ECG) is a long-standing diagnostic tool. Yet machine learning for ECG interpretation remains fragmented, often limited to narrow tasks or datasets. FMs promise broader adaptability, but fundamental questions remain: Which architectures generalize best? How do models scale with limited labels? What explains performance differences across model families? We benchmarked eight ECG FMs on 26 clinically relevant tasks using 12 public datasets comprising 1,650 regression and classification targets. Models were evaluated under fine-tuning and frozen settings, with scaling analyses across dataset sizes.

ICLR 2026 Poster accepted paper at ICLR 2026. Visual Question Answering (VQA) enables targeted and context-dependent analysis of medical images, such as chest X-rays (CXRs). However, existing VQA datasets for CXRs are typically constrained by simplistic and brief answer formats, lacking localization annotations (e.g., bounding boxes) and structured tags (e.g., region or radiological finding/disease tags). To address these limitations, we introduce MIMIC-Ext-CXR-QBA (abbr. CXR-QBA), a large-scale CXR VQA dataset derived from MIMIC-CXR, comprising 42 million QA-pairs with multi-granular, multi-part answers, detailed bounding boxes, and structured tags. Code/project link: https://github.com/philip-mueller/mimic-ext-cxr-qba/

ICLR 2026 Poster accepted paper at ICLR 2026. Vision-Language Models (VLMs) for radiology report generation are typically trained to mimic the narrative flow of human experts. However, we identify a potential limitation in this conventional paradigm. We hypothesize that optimizing for narrative coherence encourages models to rely on linguistic priors and inter-sentence correlations, which can weaken their grounding in direct visual evidence and lead to factual inaccuracies. To investigate this, we design a controlled experiment demonstrating that as textual context increases, a model's reliance on the input image systematically decays. We propose LLaVA-TA (Topic-guided and Anatomy-aware), a new fine-tuning framework that directly addresses this challenge by re-engineering the generation process.

ICLR 2026 Poster accepted paper at ICLR 2026. Fusing histopathology images and genomics data with deep learning has significantly advanced precision oncology. However, genomics data is often missing due to its high acquisition cost and complexity in real-world clinical scenarios. Existing solutions aim to reconstruct genomics data from histopathology images. Nevertheless, these methods typically relied only on individual case and overlooked the potential relationships among cases. Additionally, they failed to take advantage of the authentic genomics data of diagnostically related cases that are accessible from training for inference. In this work, we propose a novel Multi-modal Structural Representation Learning (MSRL) framework for data-efficient precision oncology. Code/project link: https://github.com/WkEEn/MSRL

ICLR 2026 Poster accepted paper at ICLR 2026. Accurate detection of all pathological findings in 3D medical images remains a significant challenge, as supervised models are limited to detecting only the few pathology classes annotated in existing datasets. To address this, we frame pathology detection as an unsupervised visual anomaly segmentation (UVAS) problem, leveraging the inherent rarity of pathological patterns compared to healthy ones. We enhance the existing density-based UVAS framework with two key innovations: (1) dense self-supervised learning for feature extraction, eliminating the need for supervised pretraining, and (2) learned, masking-invariant dense features as conditioning variables, replacing hand-crafted positional encodings. Trained on over 30,000 unlabeled 3D CT volumes, our fully self-supervised model, Screener, outperforms existing UVAS methods on four large-scale test datasets comprising 1,820 scans with diverse pathologies. Code/project link: https://github.com/mishgon/screener; https://anonymous.4open.science/r/screener-35EE/

ICLR 2026 Poster accepted paper at ICLR 2026. We present a systematic study of medical-domain interpretability in Large Language Models (LLMs). We study how the LLMs both represent and process medical knowledge through four different interpretability techniques: (1) UMAP projections of intermediate activations, (2) gradient-based saliency with respect to the model weights, (3) layer lesioning/removal and (4) activation patching. We present knowledge maps of five LLMs which show, at a coarse-resolution, where knowledge about patient's ages, medical symptoms, diseases and drugs is stored in the models. In particular for Llama3.3-70B, we find that most medical knowledge is processed in the first half of the model's layers.

ICLR 2026 Poster accepted paper at ICLR 2026. Deploying clinical ML is slow and brittle: models that work at one hospital often degrade under distribution shifts at the next. In this work, we study a simple question -- can large language models (LLMs) create portable patient embeddings i.e. representations of patients enable a downstream predictor built on one hospital to be used elsewhere with minimal-to-no retraining and fine-tuning. To do so, we map from irregular ICU time series onto concise natural language summaries using a frozen LLM, then embed each summary with a frozen text embedding model to obtain a fixed length vector capable of serving as input to a variety of downstream predictors.

ICLR 2026 Poster accepted paper at ICLR 2026. Pretrained medical foundation models (FMs) have shown strong generalization across diverse imaging tasks, such as disease classification in radiology and tumor grading in histopathology. While recent advances in parameter-efficient finetuning have enabled effective adaptation of FMs to downstream tasks, these approaches are typically designed for a single modality. In contrast, many clinical workflows rely on joint diagnosis from heterogeneous domains, such as radiology and pathology, where fully leveraging the representation capacity of multiple FMs remains an open challenge. To address this gap, we propose Concept Tuning and Fusing (CTF), a parameter-efficient framework that uses clinically grounded concepts as a shared semantic interface to enable cross-modal co-adaptation before fusion. Code/project link: https://github.com/HKU-MedAI/CTF; https://github.com/neuronflow/BraTS-Toolkit

HuatuoGPT2-SFT-GPT4-140K is a Chinese medical supervised fine-tuning dataset containing medical instruction-style conversations and GPT-4-assisted responses. It is useful for Chinese medical assistant alignment and medical LLM instruction tuning.

Huatuo-26M is a large-scale Chinese medical question-answering dataset with about 26 million QA pairs collected for medical language modeling and medical dialogue research. It is suitable for Chinese medical LLM pretraining, fine-tuning, and QA system development.