搜索医学 AI 论文与资源

ICLR 2026 Poster accepted paper at ICLR 2026. Current methods for detecting spurious correlations rely on data splits or error patterns, leaving many harmful shortcuts invisible when counterexamples are absent. We introduce BEE (Bridging Explainability and Embeddings), a framework that shifts the focus from model predictions to the weight space and embedding geometry underlying decisions. By analyzing how fine-tuning perturbs pretrained representations, BEE uncovers spurious correlations that remain hidden from conventional evaluation pipelines. We use linear probing as a transparent diagnostic lens, revealing spurious features that not only persist after full fine-tuning but also transfer across diverse state-of-the-art models. Code/project link: https://github.com/bit-ml/bee

ICLR 2026 Poster accepted paper at ICLR 2026. The ability to distinguish subtle differences between visually similar images is essential for diverse domains such as industrial anomaly detection, medical imaging, and aerial surveillance. While comparative reasoning benchmarks for vision-language models (VLMs) have recently emerged, they primarily focus on images with large, salient differences and fail to capture the nuanced reasoning required for real-world applications. In this work, we introduce **VLM-SubtleBench**, a benchmark designed to evaluate VLMs on *subtle comparative reasoning*. Our benchmark covers ten difference types—Attribute, State, Emotion, Temporal, Spatial, Existence, Quantity, Quality, Viewpoint, and Action—and curate paired question–image sets reflecting these fine-grained variations.

ICLR 2026 Poster accepted paper at ICLR 2026. Typographic attacks exploit multi-modal systems by injecting text into images, leading to targeted misclassifications, malicious content generation and even Vision-Language Model jailbreaks. In this work, we analyze how CLIP vision encoders behave under typographic attacks, locating specialized attention heads in the latter half of the model's layers that causally extract and transmit typographic information to the cls token. Building on these insights, we introduce Dyslexify - a method to defend CLIP models against typographic attacks by selectively ablating a typographic circuit, consisting of attention heads. Without requiring finetuning, dyslexify improves performance by up to 22.06\% on a typographic variant of ImageNet-100, while reducing standard ImageNet-100 accuracy by less than 1\%, and demonstrate its utility in a medical foundation model for skin lesion diagnosis.

ICLR 2026 Poster accepted paper at ICLR 2026. Spectral imaging offers promising applications across diverse domains, including medicine and urban scene understanding, and is already established as a critical modality in remote sensing. However, variability in channel dimensionality and captured wavelengths among spectral cameras impede the development of AI-driven methodologies, leading to camera-specific models with limited generalizability and inadequate cross-camera applicability. To address this bottleneck, we introduce CARL, a model for Camera-Agnostic Representation Learning across RGB, multispectral, and hyperspectral imaging modalities. To enable the conversion of a spectral image with any channel dimensionality to a camera-agnostic representation, we introduce a novel spectral encoder, featuring a self-attention-cross-attention mechanism, to distill salient spectral information into learned spectral representations. Code/project link: https://github.com/IMSY-DKFZ/CARL

ICLR 2026 Poster accepted paper at ICLR 2026. DNA methylation (DNAm) is a key epigenetic modification that regulates gene expression and is pivotal in development and disease. However, profiling DNAm at genome scale is challenging: of $\textasciitilde$28 million CpG sites in the human genome, only about 1–3\% are typically assayed in common datasets due to technological limitations and cost. Recent deep learning approaches, including masking-based generative Transformer models, have shown promise in capturing DNAm–gene expression relationships, but they rely on partially observed DNAm values for unmeasured CpGs and cannot be applied to completely unmeasured samples. To overcome this barrier, we introduce MethylProphet, a gene-guided, context-aware Transformer model for whole-genome DNAm inference without any measured DNAm input.

ICLR 2026 Poster accepted paper at ICLR 2026. This paper addresses the critical challenge of unlearning in Vertical Federated Learning (VFL), a setting that has received far less attention than its horizontal counterpart. Specifically, we propose the first method tailored to *label unlearning* in VFL, where labels play a dual role as both essential inputs and sensitive information. To this end, we employ a representation-level manifold mixup mechanism to generate synthetic embeddings for both unlearned and retained samples. This is to provide richer signals for the subsequent gradient-based label forgetting and recovery steps. These augmented embeddings are then subjected to gradient-based label forgetting, effectively removing the associated label information from the model. Code/project link: https://github.com/bryanhx/Towards-Privacy-Guaranteed-Label-Unlearning-in-Vertical-Federated-Learning

ICLR 2026 Poster accepted paper at ICLR 2026. This paper aims to develop a lower prediction bound (LPB) for survival time across different treatments in the general right-censored setting. Although previous methods have utilized conformal prediction to construct the LPB, their resulting prediction sets provide only probably approximately correct (PAC)–type miscoverage guarantees rather than exact ones. To address this problem, we propose a new calibration procedure under the potential outcome framework. Under the strong ignorability assumption, we propose a reweighting scheme that can transform the problem into a weighted conformal inference problem, allowing an LPB to be obtained via quantile regression with an exact miscoverage guarantee.

ICLR 2026 Poster accepted paper at ICLR 2026. Real-world temporal data often consists of multiple signal types recorded at irregular, asynchronous intervals. For instance, in the medical domain, different types of blood tests can be measured at different times and frequencies, resulting in fragmented and unevenly scattered temporal data. Similar issues of irregular sampling occur in other domains, such as the monitoring of large systems using event log files. Effectively learning from such data requires handling sets of temporal sparse and heterogeneous signals. In this work, we propose Super Mixing Additive Networks (SuperMAN), a novel and interpretable-by-design framework for learning directly from such heterogeneous signals, by modeling them as sets of implicit graphs.

ICLR 2026 Poster accepted paper at ICLR 2026. Most existing learning-based methods for solving imaging inverse problems can be roughly divided into two classes: iterative algorithms, such as plug-and-play and diffusion methods leveraging pretrained denoisers, and unrolled architectures that are trained end-to-end for specific imaging problems. Iterative methods in the first class are computationally costly and often yield suboptimal reconstruction performance, whereas unrolled architectures are generally problem-specific and require expensive training. In this work, we propose a novel non-iterative, lightweight architecture that incorporates knowledge about the forward operator (acquisition physics and noise parameters) without relying on unrolling. Our model is trained to solve a wide range of inverse problems, such as deblurring, magnetic resonance imaging, computed tomography, inpainting, and super-resolution, and handles arbitrary image sizes and channels, such as grayscale, complex, and color data. Code/project link: https://github.com/matthieutrs/ram

ICLR 2026 Oral accepted paper at ICLR 2026. In this work, we propose FFDP, a set of IO-aware non-GEMM fused kernels supplemented with a distributed framework for image registration at unprecedented scales. Image registration is an inverse problem fundamental to biomedical and life sciences, but algorithms have not scaled in tandem with image acquisition capabilities. Our framework complements existing model parallelism techniques proposed for large-scale transformer training by optimizing non-GEMM bottlenecks and enabling convolution-aware tensor sharding. We demonstrate unprecedented capabilities by performing multimodal registration of a 100μm ex-vivo human brain MRI volume at native resolution – an inverse problem more than 570× larger than a standard clinical datum in about a minute using only 8 A6000 GPUs.

ICLR 2026 Poster accepted paper at ICLR 2026. Recovering true signals from noisy measurements is a central challenge in inverse problems spanning medical imaging, geophysics, and signal processing. Current solutions nearly always balance prior assumptions regarding the true signal (regularization) with agreement to noisy measured data (data-fidelity). Conventional data-fidelity loss functions, such as mean-squared error (MSE) or negative log-likelihood, seek pointwise agreement with noisy measurements, often leading to overfitting to noise. In this work, we instead evaluate data-fidelity collectively by testing whether the observed measurements are statistically consistent with the noise distributions implied by the current estimate.

ICLR 2026 Poster accepted paper at ICLR 2026. We present a dynamical-systems based model for resting-state functional magnetic resonance imaging (rs-fMRI), trained on a dataset of roughly $40$K rs-fMRI sequences covering a wide variety of public and available-by-permission datasets. While most existing proposals use transformer backbones, we utilize multi-resolution temporal modeling of the dynamics across parcellated brain regions. We show that MnemoDyn is compute efficient and generalizes very well across diverse populations and scanning protocols. When benchmarked against current state-of-the-art transformer-based approaches, MnemoDyn consistently delivers superior reconstruction quality.

ICLR 2026 Poster accepted paper at ICLR 2026. Prior-data fitted networks (PFNs) have recently been proposed as a promising way to train tabular foundation models. PFNs are transformers that are pre-trained on synthetic data generated from a prespecified prior distribution and that enable Bayesian inference through in-context learning. In this paper, we introduce CausalFM, a comprehensive framework for training PFN-based foundation models in various causal inference settings. First, we formalize the construction of Bayesian priors for causal inference based on structural causal models (SCMs) in a principled way and derive necessary criteria for the validity of such priors. Building on this, we propose a novel family of prior distributions using causality-inspired Bayesian neural networks that enable CausalFM to perform Bayesian causal inference in various settings, including for back-door, front-door, and instrumental variable adjustment.

ICLR 2026 Poster accepted paper at ICLR 2026. Subject-agnostic brain decoding, which aims to reconstruct continuous visual experiences from fMRI without subject-specific training, holds great potential for clinical applications. However, this direction remains underexplored due to challenges in cross-subject generalization and the complex nature of brain signals. In this work, we propose Visual Cortex Flow Architecture (VCFlow), a novel hierarchical decoding framework that explicitly models the ventral-dorsal architecture of the human visual system to learn multi-dimensional representations. By disentangling and leveraging features from early visual cortex, ventral, and dorsal streams, VCFlow captures diverse and complementary cognitive information essential for visual reconstruction.

ICLR 2026 Poster accepted paper at ICLR 2026. Subsampling significantly reduces the number of measurements, thereby streamlining data processing and transfer overhead, and shortening acquisition time across diverse real-world applications. The recently introduced Active Deep Probabilistic Subsampling (A-DPS) approach jointly optimizes both the subsampling pattern and the downstream task model, enabling instance- and subject-specific sampling trajectories and effective adaptation to new data at inference time. However, this approach does not fully leverage valuable dataset priors and relies on top-1 sampling, which can impede the optimization process. Herein, we enhance A-DPS by integrating a deterministic (fixed) prior-informed sampling pattern derived from the training dataset, along with group-based sampling via top-k sampling, to achieve more robust optimization—method we call Prior-aware and context-guided Group-based Active DPS (PGA-DPS).

ICLR 2026 Poster accepted paper at ICLR 2026. Recent years have witnessed remarkable progress in multimodal learning within computational pathology. Existing models primarily rely on vision and language modalities; however, language alone lacks molecular specificity and offers limited pathological supervision, leading to representational bottlenecks. In this paper, we propose STAMP, a Spatial Transcriptomics-Augmented Multimodal Pathology representation learning framework that integrates spatially-resolved gene expression profiles to enable molecule-guided joint embedding of pathology images and transcriptomic data. Our study shows that self-supervised, gene-guided training provides a robust and task-agnostic signal for learning pathology image representations. Code/project link: https://github.com/Hanminghao/STAMP

ICLR 2026 Poster accepted paper at ICLR 2026. Few-shot Whole Slide Image (WSI) classification is severely hampered by overfitting. We argue that this is not merely a data-scarcity issue but a fundamentally geometric problem. Grounded in the manifold hypothesis, our analysis shows that features from pathology foundation models exhibit a low-dimensional manifold geometry that is easily perturbed by downstream models. This insight reveals a key potential issue in downstream multiple instance learning models: linear layers are geometry-agnostic and, as we show empirically, can distort the manifold geometry of the features. To address this, we propose the Manifold Residual (MR) block, a plug-and-play module that is explicitly geometry-aware. Code/project link: https://github.com/BearCleverProud/MR-Block

ICLR 2026 Poster accepted paper at ICLR 2026. Anomaly detection is a critical task in computer vision with profound implications for medical imaging, where identifying pathologies early can directly impact patient outcomes. While recent unsupervised anomaly detection approaches show promise, they require substantial normal training data and struggle to generalize across anatomical contexts. We introduce D$^2$4FAD, a novel dual distillation framework for few-shot anomaly detection that identifies anomalies in previously unseen tasks using only a small number of normal reference images. Our approach leverages a pre-trained encoder as a teacher network to extract multi-scale features from both support and query images, while a student decoder learns to distill knowledge from the teacher on query images and self-distill on support images. Code/project link: https://github.com/ttttqz/D24FAD

ICLR 2026 Poster accepted paper at ICLR 2026. Accurate cell instance segmentation is foundational for digital pathology analysis. Existing methods based on contour detection and distance mapping still face significant challenges in processing complex and dense cellular regions. Graph coloring-based methods provide a new paradigm for this task, yet the effectiveness of this paradigm in real-world scenarios with dense overlaps and complex topologies has not been verified. Addressing this issue, we release a large-scale dataset GBC-FS 2025, which contains highly complex and dense sub-cellular nuclear arrangements. We conduct the first systematic analysis of the chromatic properties of cell adjacency graphs across four diverse datasets and reveal an important discovery: most real-world cell graphs are non-bipartite, with a high prevalence of odd-length cycles (predominantly triangles).

ICLR 2026 Poster accepted paper at ICLR 2026. The rapid progress of visual autoregressive (VAR) models has brought new opportunities for text-to-image generation, but also heightened safety concerns. Existing concept erasure techniques, primarily designed for diffusion models, fail to generalize to VARs due to their next-scale token prediction paradigm. In this paper, we first propose a novel VAR Erasure framework **VARE** that enables stable concept erasure in VAR models by leveraging auxiliary visual tokens to reduce fine-tuning intensity. Building upon this, we introduce **S-VARE**, a novel and effective concept erasure method designed for VAR, which incorporates a filtered cross entropy loss to precisely identify and minimally adjust unsafe visual tokens, along with a preservation loss to maintain semantic fidelity, addressing the issues such as language drift and reduced diversity introduce by na\"ive fine-tuning.

ICLR 2026 Poster accepted paper at ICLR 2026. Predicting individualized potential outcomes in sequential decision-making is central for optimizing therapeutic decisions in personalized medicine (e.g., which dosing sequence to give to a cancer patient). However, predicting potential out- comes over long horizons is notoriously difficult. Existing methods that break the curse of the horizon typically lack strong theoretical guarantees such as orthogonality and quasi-oracle efficiency. In this paper, we revisit the problem of predicting individualized potential outcomes in sequential decision-making (i.e., estimating Q-functions in Markov decision processes with observational data) through a causal inference lens.

ICLR 2026 Poster accepted paper at ICLR 2026. Hybrid neural ordinary differential equations (neural ODEs) integrate mechanistic models with neural ODEs, offering strong inductive bias and flexibility, and are particularly advantageous in data-scarce healthcare settings. However, excessive latent states and interactions from mechanistic models can lead to training inefficiency and over-fitting, limiting practical effectiveness of hybrid neural ODEs. In response, we propose a new hybrid pipeline for automatic state selection and structure optimization in mechanistic neural ODEs, combining domain-informed graph modifications with data-driven regularization to sparsify the model for improving predictive performance and stability while retaining mechanistic plausibility. Experiments on synthetic and real-world data show improved predictive performance and robustness with desired sparsity, establishing an effective solution for hybrid model reduction in healthcare applications.

ICLR 2026 Poster accepted paper at ICLR 2026. Learning from multi-variate time-series with heterogeneous channel configurations remains a fundamental challenge for deep neural networks, particularly in clinical domains such as intracranial electroencephalography (iEEG), where channel setups vary widely across subjects. In this work, we introduce multi-variate parallel attention (MVPA), a novel self-attention mechanism that disentangles content, temporal, and spatial attention, enabling flexible, generalizable, and efficient modeling of time-series data with varying channel counts and configurations. We use MVPA to build MVPFormer, a generative foundation model for human electrophysiology, trained to predict the evolution of iEEG signals across diverse subjects. To support this and future efforts by the community, we release the SWEC iEEG dataset, the largest publicly available iEEG dataset to date, comprising nearly 10,000 hours of recordings from heterogeneous clinical sources. Code/project link: https://github.com/IBM/multi-variate-parallel-transformer; https://huggingface.co/datasets/NeuroTec/SWEC_iEEG_Dataset

ICLR 2026 Poster accepted paper at ICLR 2026. Brain tumor segmentation in multi-modal MRIs poses significant challenges when one or more modalities are missing. Recent approaches commonly employ parallel fusion strategies; however, these methods often risk losing crucial shared information across modalities, which can degrade segmentation performance. In this paper, we advocate leveraging sequential information bottleneck fusion to effectively preserve shared information across modalities. From an information-theoretic perspective, sequential fusion not only produces more robust fused representations in missing-data scenarios but also achieves a tighter generalization upper bound compared to parallel fusion approaches.

ICLR 2026 Poster accepted paper at ICLR 2026. As large language models (LLMs) continue to revolutionize AI research, there is a growing interest in building large-scale brain foundation models to advance neuroscience. While most existing brain foundation models are pre-trained on time-series signals or connectome features, we propose a novel graph-based pre-training paradigm for constructing a brain graph foundation model. In this paper, we introduce the Brain Graph Foundation Model, termed BrainGFM, a unified framework that leverages graph contrastive learning and graph masked autoencoders for large-scale fMRI-based pre-training. BrainGFM is pre-trained on a diverse mixture of brain atlases with varying parcellations, significantly expanding the pre-training corpus and enhancing the model’s ability to generalize across heterogeneous fMRI-derived brain representations. Code/project link: https://github.com/weixinxu666/BrainGFM

ICLR 2026 Poster accepted paper at ICLR 2026. Ultrasound imaging is widely used due to its safety, affordability, and real-time capabilities, but its 2D interpretation is highly operator-dependent, leading to variability and increased cognitive demand. We present $\textbf{UltraGauss}$: an ultrasound-specific Gaussian Splatting framework that serves as an efficient approximation to acoustic image formation. Unlike projection-based splatting, UltraGauss renders by $\textit{probe-plane intersection}$ with in-plane aggregation, aligning with plane-based echo sampling while remaining fast and memory-efficient. A stable parameterisation and compute-aware GPU rasterisation make this method practical at scale. Code/project link: https://www.robots.ox.ac.uk/~vgg/research/UltraGauss/

ICLR 2026 Poster accepted paper at ICLR 2026. Estimating heterogeneous treatment effects (HTEs) in time-varying settings is particularly challenging, as the probability of observing certain treatment sequences decreases exponentially with longer prediction horizons. Thus, the observed data contain little support for many plausible treatment sequences, which creates severe overlap problems. Existing meta-learners for the time-varying setting typically assume adequate treatment overlap, and thus suffer from exploding estimation variance when the overlap is low. To address this problem, we introduce a novel overlap-weighted orthogonal WO meta-learner for estimating HTEs that targets regions in the observed data with high probability of receiving the interventional treatment sequences.

ICLR 2026 Poster accepted paper at ICLR 2026. Modeling the temporal dynamics of the human brain remains a core challenge in computational neuroscience and artificial intelligence. Traditional methods often ignore the biological spike characteristics of brain activity and find it difficult to reveal the dynamic dependencies and causal interactions between brain regions, limiting their effectiveness in brain function research and clinical applications. To address this issue, we propose a Spike-based Digital Brain (Spike-DB), a novel fundamental model that introduces the spike computing paradigm into brain time series modeling. Spike-DB encodes fMRI signals as spike trains and learns the temporal driving relationships between anchor and target regions to achieve high-precision prediction of brain activity and reveal underlying causal dependencies and dynamic relationship characteristics. Code/project link: https://github.com/UAIBC-Brain/Spike-DB

ICLR 2026 Poster accepted paper at ICLR 2026. Adapters have become a widely adopted strategy for efficient fine-tuning of foundation models, particularly in resource-constrained settings. However, their performance under extreme data scarcity—common in medical imaging due to high annotation costs, privacy regulations, and fragmented datasets—remains underexplored. In this work, we present the first comprehensive study of adapter-based fine-tuning for vision foundation models in low-data medical imaging scenarios. We find that, contrary to their promise, conventional Adapters can degrade performance under severe data constraints, performing even worse than simple linear probing when trained on less than 1\% of the corresponding training data.

ICLR 2026 Poster accepted paper at ICLR 2026. Accurate registration of brain MRI scans is fundamental for cross-subject analysis in neuroscientific studies. This involves aligning both the cortical surface of the brain and the interior volume. Traditional methods treat volumetric and surface-based registration separately, which often leads to inconsistencies that limit downstream analyses. We propose a deep learning framework, UCS, that registers 3D brain MRI images by jointly aligning both cortical and subcortical regions, through a unified volume-and-surface-based representation. Our approach leverages an intermediate spherical coordinate space to bridge anatomical surface topology with volumetric anatomy, enabling consistent and anatomically accurate alignment.

ICLR 2026 Poster accepted paper at ICLR 2026. Estimating heterogeneous treatment effects (HTEs) from right-censored survival data is critical in high-stakes applications such as precision medicine and individualized policy-making. Yet, the survival analysis setting poses unique challenges for HTE estimation due to censoring, unobserved counterfactuals, and complex identification assumptions. Despite recent advances, from causal survival forests to survival meta-learners and outcome imputation approaches, evaluation practices remain fragmented and inconsistent. We introduce SurvHTE‐Bench, the first comprehensive benchmark for HTE estimation with censored outcomes. The benchmark spans (i) a modular suite of synthetic datasets with known ground truth, systematically varying causal assumptions and survival dynamics, (ii) semi-synthetic datasets that pair real-world covariates with simulated treatments and outcomes, and (iii) real-world datasets from a twin study (with known ground truth) and from an HIV clinical trial.

ICLR 2026 Poster accepted paper at ICLR 2026. Neural encoding models aim to predict fMRI-measured brain responses to natural images. fMRI data is acquired as a 3D volume of voxels, where each voxel has a defined spatial location in the brain. However, conventional encoding models often flatten this volume into a 1D vector and treat voxel responses as independent outputs. This removes spatial context, discards anatomical information, and ties each model to a subject-specific voxel grid. We introduce the NRF Neural Response Function, a framework that models fMRI activity as a continuous function over anatomical space rather than a flat vector of voxels. NRF represents brain activity as a continuous implicit function: given an image and a spatial coordinate (x, y, z) in standardized MNI space, the model predicts the response at that location.